Are you comparing noise between feathers and vanes off the flipper rest or vanes off the rest and feathers off the shelf?
Comparing vanes and feathers off the same flipper and bow. I think the noise I hear is the vane making contact with the flipper. I tried it cock fletch in and out though and still heard a "snap" of the arrow leaving the bow (vane fletched, silent with feather fletched). I have the bow bareshaft tuned perfectly and arrow flight is good.