I would suggest that you completely clean your rifle with an abrasive cleaner then go through the break in procedure again.

Here is a quote from Krieger:
There are two basic types of bore cleaners -- chemical and abrasive. The chemical cleaners are usually a blend of various ingredients including oils and ammonia that attack the copper. The abrasive cleaners generally contain no chemicals and are an oil, wax, or grease base with an extremely fine abrasive such as chalk, clay, or gypsum. They clean by mechanically removing the fouling. Both are good, and we feel that neither will damage the bore when used properly.
So what is the proper way to use them? First, not all chemical cleaners are compatible with each other. Some, when used together at a certain temperature, can cause severe pitting of the barrel -- even stainless steel barrels. It is fine to use two different cleaners as long as you completely remove the first cleaner from the barrel before cleaning with the second. And, of course, never mix them in the same bottle.

Dan Lilja as a borescope video of a factory Remington 700 barrel 7mm Mag i think. Just for FYI
http://riflebarrels.com/