The Hoyt owners manual is only dealing with cam timing and that's only part of tuning the command cams. Timing is what allows the cams to roll through their optimum power range. The part the manual doesn't address is getting the cams synchronized with each other so they roll over at the same time. Make small adjustments to the cable lengths until both cams roll over and hit the wall at the same time. Don't worry about the timing marks being the same. As long as the cams are synchronized and the cables are between the marks, then you're in business.