Zak, every bow I have ever shot has been the same as yours, pins just to the left (right handed shooter) of the string when lining up the tip of the arrow and string as you stated. There couldn't have been a problem with every bow I have owned. The common denominator would be myself. Center shot gets you close and then you paper tune to fine tune the bow to your personal form. Shooting those bullet holes is whats important and even more so when shooting broadheads. If you can go out on any given day and shoot a bullet hole through paper then you have consistent form. I guess what I am saying is IMHO don't worry if your pins aren't perfectly lined up with the string. ( I'm assuming they are just slightly to the side). Your arrow grouping is the only thing that matters. Another thing to think about is you are lining them up at brace, what do they look like at full draw? You'll never know.